HMM-based Protein Structure Prediction, SAM-T02

The SAM-T02 service was moved from the moai cluster to the bmecluster on 30 Jan 2009. Please report any problems to sam-info@soe.ucsc.edu

The SAM-T02 web page should be working correctly now---please report any problems to sam-info@soe.ucsc.edu.

We only accept chains with < 600 amino acids, to avoid overloading our server. (Increased from previous limit of 500, 2 June 2004.)

This site is obsolete

This site is obsolete and is maintained only for doing historical comparisons, to document improvements in methods. Please use the newer server at http://compbio.soe.ucsc.edu/SAM_T08/T08-query.html

This page now uses browser-based delivery.

To receive the url of your results page by email, check the email-results-url box. For the benefit of certain meta servers, we have also provided an option for getting some of the results by e-mail in CASP-formatted files.

email address (required):
email results url
Subject for e-mail (optional)
email CASP models
Subject for e-mail (optional)

Either cut and paste your FASTA-formatted sequence in the box below or upload it from a file on your local system. Remember that the FASTA format requires a ">" symbol as the first character of the first line, with the ID of the sequence immediately following (no spaces). The SAM-T02 server is not as tolerant of sloppy input as some of our other servers. At this time, SAM-T02 will only process one sequence at a time, and the amino acids must all be in upper case.

Cut and paste your sequence here, ...

or specify the sequence-containing file on your system here.

Please read the explanation of common errors on our SAM-T02 Frequently-asked Questions page. If you do not find a solution to your problem there, please inform us at sam-info@soe.ucsc.edu.