Counts of observed changes for context-conserved 4D sites

Counts of observed changes of bases between human and mouse for 4D sites of aligned 4D codons where the first two bases are conserved. This data is used to estimate the number of substitutions per site from the common ancestor. Table rows are human bases pair with the mouse bases in the columns. See the methods page for a description of the categories.

*including CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	265000	38827	79672	32429
	C	35488	387058	42007	91022
	G	91396	42545	391196	35556
	T	32300	79703	39378	265695
		total=1949272

*including CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	58613	7189	13834	5822
	C	2892	31427	2996	7418
	G	7462	3102	31175	2892
	T	5918	13874	7128	58981
		total=260723

*including CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	83429	11549	23392	9007
	C	6329	74888	7916	16309
	G	16785	7922	76946	6299
	T	8790	23220	12051	84099
		total=468931

*including CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	122958	20089	42446	17600
	C	26267	280743	31095	67295
	G	67149	31521	283075	26365
	T	17592	42609	20199	122615
		total=1219618

*including CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	21751	1877	3580	2115
	C	1189	10484	881	2944
	G	2927	971	10445	1187
	T	2089	3818	1975	21809
		total=90042

*including CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	76868	9213	18299	7891
	C	4937	54452	5224	12970
	G	13287	5192	54589	5059
	T	7842	18320	9255	77844
		total=381242

*including CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	166381	27737	57793	22423
	C	29362	322122	35902	75108
	G	75182	36382	326162	29310
	T	22369	57565	28148	166042
		total=1477988

*excluding CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	265000	27122	53983	32429
	C	23315	351590	21636	60472
	G	60374	21717	355255	23142
	T	32300	54270	27320	265695
		total=1675620

*excluding CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	58613	5285	9799	5822
	C	2179	29564	1744	5490
	G	5415	1776	29221	2134
	T	5918	9904	5157	58981
		total=237002

*excluding CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	83429	8149	16160	9007
	C	4368	68361	4147	11354
	G	11774	4186	70277	4377
	T	8790	15861	8592	84099
		total=412931

*excluding CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	122958	13688	28024	17600
	C	16768	253665	15745	43628
	G	43185	15755	255757	16631
	T	17592	28505	13571	122615
		total=1025687

*excluding CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	21751	1433	2675	2115
	C	939	9949	534	2221
	G	2110	578	9893	900
	T	2089	2901	1478	21809
		total=83375

*excluding CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	76868	6734	12953	7891
	C	3498	50344	2855	9289
	G	9525	2840	50421	3577
	T	7842	12965	6700	77844
		total=342146

*excluding CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	166381	18955	38355	22423
	C	18878	291297	18247	48962
	G	48739	18299	294941	18665
	T	22369	38404	19142	166042
		total=1250099