Counts of observed changes for ancestral repeat sites

Counts of observed changes of bases between human and mouse for aligned ancestral repeat sites. This data is used to estimate the number of substitutions per site from the common ancestor. Table rows are human bases pair with the mouse bases in the columns. See the methods page for a description of the categories.

*including CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	35127765	3277845	8335483	3465714
	C	2717828	19963517	1970859	7748804
	G	7736110	1967259	19957201	2719395
	T	3464532	8340210	3285015	35217972
		total=165295509

*including CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	10379099	901924	2226148	1123231
	C	810043	4635723	502500	2155029
	G	2153740	502132	4638942	811368
	T	1121320	2223692	903015	10402821
		total=45490727

*including CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	13959916	1280713	3281561	1334875
	C	1030495	7639199	747216	2985301
	G	2985157	745461	7636769	1029343
	T	1336030	3282741	1284041	13981365
		total=64540183

*including CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	10788750	1095208	2827774	1007608
	C	877290	7688595	721143	2608474
	G	2597213	719666	7681490	878684
	T	1007182	2833777	1097959	10833786
		total=55264599

*including CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	6507885	526510	1278305	737278
	C	543619	2695880	301711	1394725
	G	1396944	301561	2700087	543124
	T	738125	1278336	526926	6509459
		total=27980475

*including CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	12146139	1069028	2721969	1189898
	C	900560	6181988	618402	2572288
	G	2570606	616622	6179779	902761
	T	1186548	2719265	1071528	12174583
		total=54821964

*including CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	16473741	1682307	4335209	1538538
	C	1273649	11085649	1050746	3781791
	G	3768560	1049076	11077335	1273510
	T	1539859	4342609	1686561	16533930
		total=82493070

*excluding CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	35127765	3081342	7869850	3465714
	C	2593320	19146367	1787488	7410901
	G	7398081	1784323	19142027	2594089
	T	3464532	7874006	3087632	35217972
		total=161045409

*excluding CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	10379099	860146	2133529	1123231
	C	782567	4485349	466999	2082801
	G	2081696	467020	4488653	783358
	T	1121320	2130533	860994	10402821
		total=44650116

*excluding CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	13959916	1204934	3103074	1334875
	C	986969	7346715	681683	2865909
	G	2865829	679714	7344936	985675
	T	1336030	3104063	1207837	13981365
		total=62989524

*excluding CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	10788750	1016262	2633247	1007608
	C	823784	7314303	638806	2462191
	G	2450556	637589	7308438	825056
	T	1007182	2639410	1018801	10833786
		total=53405769

*excluding CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	6507885	506683	1236982	737278
	C	526022	2619033	283015	1349323
	G	1351702	282900	2622858	525302
	T	738125	1236670	507199	6509459
		total=27540436

*excluding CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	12146139	1013481	2594074	1189898
	C	865411	5967671	569205	2476245
	G	2474563	567793	5966445	867242
	T	1186548	2591096	1015324	12174583
		total=53665718

*excluding CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	16473741	1561178	4038794	1538538
	C	1201887	10559663	935268	3585333
	G	3571816	933630	10552724	1201545
	T	1539859	4046240	1565109	16533930
		total=79839255