Counts of observed changes for all aligned sites

Counts of observed changes of bases between human and mouse for all aligned sites. This data is used to estimate the number of substitutions per site from the common ancestor. Table rows are human bases pair with the mouse bases in the columns. See the methods page for a description of the categories.

*including CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	210737286	18090792	46032382	18809453
	C	15054042	128379342	11369609	42534459
	G	42526349	11367037	128422113	15072397
	T	18819346	46063809	18128921	211140971
		total=982548308

*including CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	70510632	5562475	13785935	6847372
	C	4631647	30115562	2909454	12320014
	G	12309859	2907903	30106651	4635481
	T	6850354	13795906	5571484	70633900
		total=293494629

*including CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	79061340	6756281	17334032	6748564
	C	5176587	44765986	3930612	14953590
	G	14967262	3932161	44781086	5182623
	T	6754703	17338183	6771656	79173222
		total=357627888

*including CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	61165314	5772036	14912415	5213517
	C	5245808	53497794	4529543	15260855
	G	15249228	4526973	53534376	5254293
	T	5214289	14929720	5785781	61333849
		total=331425791

*including CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	44732103	3312700	8080583	4584331
	C	3156581	17790674	1784881	8121817
	G	8118532	1783450	17769746	3156306
	T	4586439	8091336	3314820	44760880
		total=183145179

*including CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	71208776	5797703	14784669	6226451
	C	4602432	36597341	3266351	13110356
	G	13112888	3265966	36602001	4608585
	T	6228290	14781925	5808790	71365778
		total=311368302

*including CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	94796407	8980389	23167130	7998671
	C	7295029	73991327	6318377	21302286
	G	21294929	6317621	74050366	7307506
	T	8004617	23190548	9005311	95014313
		total=488034827

*excluding CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	210736907	16829507	43035430	18809428
	C	14076747	120898251	9981007	39952956
	G	39947754	9976632	120937836	14093813
	T	18819308	43063569	16867102	211140598
		total=949166845

*excluding CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	70510632	5272856	13130102	6847372
	C	4448184	28930409	2676936	11835015
	G	11825065	2675751	28921908	4451538
	T	6850354	13139003	5281887	70633900
		total=287430912

*excluding CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	79061340	6288411	16219692	6748564
	C	4889282	42484945	3500207	14177488
	G	14193405	3501856	42499422	4893775
	T	6754703	16223886	6303449	79173222
		total=346913647

*excluding CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	61165314	5268252	13685685	5213517
	C	4739296	49483052	3803878	13940502
	G	13929339	3799035	49516791	4748513
	T	5214289	13700732	5281783	61333849
		total=314823827

*excluding CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	44732103	3174367	7780003	4584331
	C	3039867	17190602	1661238	7814783
	G	7810814	1659725	17171442	3039006
	T	4586439	7790831	3176758	44760880
		total=179973189

*excluding CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	71208776	5444756	13964455	6226451
	C	4372690	34936209	2949542	12491469
	G	12495470	2950285	34938427	4378399
	T	6228290	13960121	5455673	71365778
		total=303366791

*excluding CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	94796407	8210396	21291021	7998671
	C	6664205	68771595	5370241	19646753
	G	19641525	5366632	68828252	6676421
	T	8004617	21312669	8234688	95014313
		total=465828406