Counts of observed changes for context-unconserved 4D sites

Counts of observed changes of bases between human and mouse for 4D sites where at least one of the aligned codons is a 4D codon and the first two bases are not conserved. This data is used to estimate the number of substitutions per site from the common ancestor. Table rows are human bases pair with the mouse bases in the columns. See the methods page for a description of the categories.

*including CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	63032	11087	26393	8454
	C	10104	98601	13076	28349
	G	28599	12902	99266	10417
	T	8326	26302	11149	63312
		total=519369

*including CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	13495	1894	4296	1436
	C	843	8731	950	2594
	G	2583	967	8823	895
	T	1527	4378	1885	13387
		total=68684

*including CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	20269	3350	7982	2448
	C	1978	20621	2551	5776
	G	5824	2541	21093	2047
	T	2289	7765	3444	20389
		total=130367

*including CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	29268	5843	14115	4570
	C	7283	69249	9575	19979
	G	20192	9394	69350	7475
	T	4510	14159	5820	29536
		total=320318

*including CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	4695	529	1068	528
	C	298	2773	287	942
	G	975	278	2722	334
	T	529	1147	498	4650
		total=22253

*including CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	17287	2425	5869	2051
	C	1530	14298	1650	4398
	G	4342	1692	14413	1567
	T	1999	5668	2469	17515
		total=99173

*including CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	40060	8006	19163	5770
	C	8206	80824	11060	22789
	G	23052	10860	81342	8437
	T	5702	19178	8042	40134
		total=392625

*excluding CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	63032	8724	21447	8454
	C	7766	83762	8159	22666
	G	22970	8043	84136	8063
	T	8326	21342	8814	63312
		total=449016

*excluding CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	13495	1553	3553	1436
	C	713	7671	664	2253
	G	2250	667	7808	752
	T	1527	3613	1499	13387
		total=62841

*excluding CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	20269	2617	6498	2448
	C	1608	17567	1657	4862
	G	4876	1607	18042	1668
	T	2289	6264	2766	20389
		total=115427

*excluding CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	29268	4554	11396	4570
	C	5445	58524	5838	15551
	G	15844	5769	58286	5643
	T	4510	11465	4549	29536
		total=270748

*excluding CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	4695	453	941	528
	C	258	2475	221	830
	G	855	208	2487	287
	T	529	998	411	4650
		total=20826

*excluding CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	18277	2086	5089	2156
	C	1337	13020	1186	3906
	G	3866	1185	13214	1346
	T	2095	4922	2131	18528
		total=94344

*excluding CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	40060	6185	15417	5770
	C	6171	68267	6752	17930
	G	18249	6650	68435	6430
	T	5702	15422	6272	40134
		total=333846