Frequencies of observed changes for context-conserved 4D sites

Frequencies of observed changes of bases between human and mouse for 4D sites of aligned 4D codons where the first two bases are conserved. This data is used to estimate the number of substitutions per site from the common ancestor. It is computed from these raw counts. Table rows are human bases pair with the mouse bases in the columns. See the methods page for a description of the categories.

*including CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1359	0.0199	0.0409	0.0166
	C	0.0182	0.1986	0.0216	0.0467
	G	0.0469	0.0218	0.2007	0.0182
	T	0.0166	0.0409	0.0202	0.1363
		id=67.2%

*including CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2248	0.0276	0.0531	0.0223
	C	0.0111	0.1205	0.0115	0.0285
	G	0.0286	0.0119	0.1196	0.0111
	T	0.0227	0.0532	0.0273	0.2262
		id=69.1%

*including CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1779	0.0246	0.0499	0.0192
	C	0.0135	0.1597	0.0169	0.0348
	G	0.0358	0.0169	0.1641	0.0134
	T	0.0187	0.0495	0.0257	0.1793
		id=68.1%

*including CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1008	0.0165	0.0348	0.0144
	C	0.0215	0.2302	0.0255	0.0552
	G	0.0551	0.0258	0.2321	0.0216
	T	0.0144	0.0349	0.0166	0.1005
		id=66.4%

*including CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2416	0.0208	0.0398	0.0235
	C	0.0132	0.1164	0.0098	0.0327
	G	0.0325	0.0108	0.1160	0.0132
	T	0.0232	0.0424	0.0219	0.2422
		id=71.6%

*including CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2016	0.0242	0.0480	0.0207
	C	0.0129	0.1428	0.0137	0.0340
	G	0.0349	0.0136	0.1432	0.0133
	T	0.0206	0.0481	0.0243	0.2042
		id=69.2%

*including CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1126	0.0188	0.0391	0.0152
	C	0.0199	0.2179	0.0243	0.0508
	G	0.0509	0.0246	0.2207	0.0198
	T	0.0151	0.0389	0.0190	0.1123
		id=66.4%

*excluding CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1582	0.0162	0.0322	0.0194
	C	0.0139	0.2098	0.0129	0.0361
	G	0.0360	0.0130	0.2120	0.0138
	T	0.0193	0.0324	0.0163	0.1586
		id=73.9%

*excluding CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2473	0.0223	0.0413	0.0246
	C	0.0092	0.1247	0.0074	0.0232
	G	0.0228	0.0075	0.1233	0.0090
	T	0.0250	0.0418	0.0218	0.2489
		id=74.4%

*excluding CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2020	0.0197	0.0391	0.0218
	C	0.0106	0.1656	0.0100	0.0275
	G	0.0285	0.0101	0.1702	0.0106
	T	0.0213	0.0384	0.0208	0.2037
		id=74.1%

*excluding CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1199	0.0133	0.0273	0.0172
	C	0.0163	0.2473	0.0154	0.0425
	G	0.0421	0.0154	0.2494	0.0162
	T	0.0172	0.0278	0.0132	0.1195
		id=73.6%

*excluding CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2609	0.0172	0.0321	0.0254
	C	0.0113	0.1193	0.0064	0.0266
	G	0.0253	0.0069	0.1187	0.0108
	T	0.0251	0.0348	0.0177	0.2616
		id=76.0%

*excluding CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2247	0.0197	0.0379	0.0231
	C	0.0102	0.1471	0.0083	0.0271
	G	0.0278	0.0083	0.1474	0.0105
	T	0.0229	0.0379	0.0196	0.2275
		id=74.7%

*excluding CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1331	0.0152	0.0307	0.0179
	C	0.0151	0.2330	0.0146	0.0392
	G	0.0390	0.0146	0.2359	0.0149
	T	0.0179	0.0307	0.0153	0.1328
		id=73.5%