Frequencies of observed changes for ancestral repeat sites

Frequencies of observed changes of bases between human and mouse for aligned ancestral repeat sites. This data is used to estimate the number of substitutions per site from the common ancestor. It is computed from these raw counts. Table rows are human bases pair with the mouse bases in the columns. See the methods page for a description of the categories.

*including CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2125	0.0198	0.0504	0.0210
	C	0.0164	0.1208	0.0119	0.0469
	G	0.0468	0.0119	0.1207	0.0165
	T	0.0210	0.0505	0.0199	0.2131
		id=66.7%

*including CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2282	0.0198	0.0489	0.0247
	C	0.0178	0.1019	0.0110	0.0474
	G	0.0473	0.0110	0.1020	0.0178
	T	0.0246	0.0489	0.0199	0.2287
		id=66.1%

*including CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2163	0.0198	0.0508	0.0207
	C	0.0160	0.1184	0.0116	0.0463
	G	0.0463	0.0116	0.1183	0.0159
	T	0.0207	0.0509	0.0199	0.2166
		id=67.0%

*including CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1952	0.0198	0.0512	0.0182
	C	0.0159	0.1391	0.0130	0.0472
	G	0.0470	0.0130	0.1390	0.0159
	T	0.0182	0.0513	0.0199	0.1960
		id=66.9%

*including CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2326	0.0188	0.0457	0.0263
	C	0.0194	0.0963	0.0108	0.0498
	G	0.0499	0.0108	0.0965	0.0194
	T	0.0264	0.0457	0.0188	0.2326
		id=65.8%

*including CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2216	0.0195	0.0497	0.0217
	C	0.0164	0.1128	0.0113	0.0469
	G	0.0469	0.0112	0.1127	0.0165
	T	0.0216	0.0496	0.0195	0.2221
		id=66.9%

*including CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1997	0.0204	0.0526	0.0187
	C	0.0154	0.1344	0.0127	0.0458
	G	0.0457	0.0127	0.1343	0.0154
	T	0.0187	0.0526	0.0204	0.2004
		id=66.9%

*excluding CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2181	0.0191	0.0489	0.0215
	C	0.0161	0.1189	0.0111	0.0460
	G	0.0459	0.0111	0.1189	0.0161
	T	0.0215	0.0489	0.0192	0.2187
		id=67.5%

*excluding CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2325	0.0193	0.0478	0.0252
	C	0.0175	0.1005	0.0105	0.0466
	G	0.0466	0.0105	0.1005	0.0175
	T	0.0251	0.0477	0.0193	0.2330
		id=66.6%

*excluding CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2216	0.0191	0.0493	0.0212
	C	0.0157	0.1166	0.0108	0.0455
	G	0.0455	0.0108	0.1166	0.0156
	T	0.0212	0.0493	0.0192	0.2220
		id=67.7%

*excluding CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2020	0.0190	0.0493	0.0189
	C	0.0154	0.1370	0.0120	0.0461
	G	0.0459	0.0119	0.1368	0.0154
	T	0.0189	0.0494	0.0191	0.2029
		id=67.9%

*excluding CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2363	0.0184	0.0449	0.0268
	C	0.0191	0.0951	0.0103	0.0490
	G	0.0491	0.0103	0.0952	0.0191
	T	0.0268	0.0449	0.0184	0.2364
		id=66.3%

*excluding CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2263	0.0189	0.0483	0.0222
	C	0.0161	0.1112	0.0106	0.0461
	G	0.0461	0.0106	0.1112	0.0162
	T	0.0221	0.0483	0.0189	0.2269
		id=67.6%

*excluding CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2063	0.0196	0.0506	0.0193
	C	0.0151	0.1323	0.0117	0.0449
	G	0.0447	0.0117	0.1322	0.0150
	T	0.0193	0.0507	0.0196	0.2071
		id=67.8%