Frequencies of observed changes for all aligned sites

Frequencies of observed changes of bases between human and mouse for all aligned sites. This data is used to estimate the number of substitutions per site from the common ancestor. It is computed from these raw counts. Table rows are human bases pair with the mouse bases in the columns. See the methods page for a description of the categories.

*including CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2145	0.0184	0.0468	0.0191
	C	0.0153	0.1307	0.0116	0.0433
	G	0.0433	0.0116	0.1307	0.0153
	T	0.0192	0.0469	0.0185	0.2149
		id=69.1%

*including CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2402	0.0190	0.0470	0.0233
	C	0.0158	0.1026	0.0099	0.0420
	G	0.0419	0.0099	0.1026	0.0158
	T	0.0233	0.0470	0.0190	0.2407
		id=68.6%

*including CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2211	0.0189	0.0485	0.0189
	C	0.0145	0.1252	0.0110	0.0418
	G	0.0419	0.0110	0.1252	0.0145
	T	0.0189	0.0485	0.0189	0.2214
		id=69.3%

*including CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1846	0.0174	0.0450	0.0157
	C	0.0158	0.1614	0.0137	0.0460
	G	0.0460	0.0137	0.1615	0.0159
	T	0.0157	0.0450	0.0175	0.1851
		id=69.3%

*including CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2442	0.0181	0.0441	0.0250
	C	0.0172	0.0971	0.0097	0.0443
	G	0.0443	0.0097	0.0970	0.0172
	T	0.0250	0.0442	0.0181	0.2444
		id=68.3%

*including CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2287	0.0186	0.0475	0.0200
	C	0.0148	0.1175	0.0105	0.0421
	G	0.0421	0.0105	0.1176	0.0148
	T	0.0200	0.0475	0.0187	0.2292
		id=69.3%

*including CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1942	0.0184	0.0475	0.0164
	C	0.0149	0.1516	0.0129	0.0436
	G	0.0436	0.0129	0.1517	0.0150
	T	0.0164	0.0475	0.0185	0.1947
		id=69.2%

*excluding CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2220	0.0177	0.0453	0.0198
	C	0.0148	0.1274	0.0105	0.0421
	G	0.0421	0.0105	0.1274	0.0148
	T	0.0198	0.0454	0.0178	0.2224
		id=69.9%

*excluding CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2453	0.0183	0.0457	0.0238
	C	0.0155	0.1007	0.0093	0.0412
	G	0.0411	0.0093	0.1006	0.0155
	T	0.0238	0.0457	0.0184	0.2457
		id=69.2%

*excluding CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2279	0.0181	0.0468	0.0195
	C	0.0141	0.1225	0.0101	0.0409
	G	0.0409	0.0101	0.1225	0.0141
	T	0.0195	0.0468	0.0182	0.2282
		id=70.1%

*excluding CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1943	0.0167	0.0435	0.0166
	C	0.0151	0.1572	0.0121	0.0443
	G	0.0442	0.0121	0.1573	0.0151
	T	0.0166	0.0435	0.0168	0.1948
		id=70.4%

*excluding CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2485	0.0176	0.0432	0.0255
	C	0.0169	0.0955	0.0092	0.0434
	G	0.0434	0.0092	0.0954	0.0169
	T	0.0255	0.0433	0.0177	0.2487
		id=68.8%

*excluding CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2347	0.0179	0.0460	0.0205
	C	0.0144	0.1152	0.0097	0.0412
	G	0.0412	0.0097	0.1152	0.0144
	T	0.0205	0.0460	0.0180	0.2352
		id=70.0%

*excluding CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2035	0.0176	0.0457	0.0172
	C	0.0143	0.1476	0.0115	0.0422
	G	0.0422	0.0115	0.1478	0.0143
	T	0.0172	0.0458	0.0177	0.2040
		id=70.3%