Frequencies of observed changes for all 4D sites

Frequencies of observed changes of bases between human and mouse for 4D sites where at least one of the aligned codons is a 4D codon and the first two bases are not required to be conserved. This data is used to estimate the number of substitutions per site from the common ancestor. It is computed from these raw counts. Table rows are human bases pair with the mouse bases in the columns. See the methods page for a description of the categories.

*including CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1329	0.0202	0.0430	0.0166
	C	0.0185	0.1967	0.0223	0.0484
	G	0.0486	0.0225	0.1987	0.0186
	T	0.0165	0.0429	0.0205	0.1333
		id=66.2%

*including CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2189	0.0276	0.0550	0.0220
	C	0.0113	0.1219	0.0120	0.0304
	G	0.0305	0.0124	0.1214	0.0115
	T	0.0226	0.0554	0.0274	0.2197
		id=68.2%

*including CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1730	0.0249	0.0524	0.0191
	C	0.0139	0.1594	0.0175	0.0369
	G	0.0377	0.0175	0.1636	0.0139
	T	0.0185	0.0517	0.0259	0.1744
		id=67.0%

*including CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.0989	0.0168	0.0367	0.0144
	C	0.0218	0.2273	0.0264	0.0567
	G	0.0567	0.0266	0.2289	0.0220
	T	0.0144	0.0369	0.0169	0.0988
		id=65.4%

*including CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2355	0.0214	0.0414	0.0235
	C	0.0132	0.1181	0.0104	0.0346
	G	0.0347	0.0111	0.1173	0.0135
	T	0.0233	0.0442	0.0220	0.2356
		id=70.6%

*including CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1959	0.0242	0.0504	0.0207
	C	0.0135	0.1430	0.0143	0.0362
	G	0.0368	0.0143	0.1437	0.0138
	T	0.0205	0.0500	0.0244	0.1984
		id=68.1%

*including CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1104	0.0191	0.0411	0.0151
	C	0.0201	0.2154	0.0251	0.0523
	G	0.0525	0.0253	0.2178	0.0202
	T	0.0150	0.0410	0.0193	0.1102
		id=65.4%

*excluding CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1544	0.0169	0.0355	0.0192
	C	0.0146	0.2049	0.0140	0.0391
	G	0.0392	0.0140	0.2068	0.0147
	T	0.0191	0.0356	0.0170	0.1549
		id=72.1%

*excluding CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2405	0.0228	0.0445	0.0242
	C	0.0096	0.1242	0.0080	0.0258
	G	0.0256	0.0081	0.1235	0.0096
	T	0.0248	0.0451	0.0222	0.2414
		id=73.0%

*excluding CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1963	0.0204	0.0429	0.0217
	C	0.0113	0.1626	0.0110	0.0307
	G	0.0315	0.0110	0.1672	0.0114
	T	0.0210	0.0419	0.0215	0.1978
		id=72.4%

*excluding CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1174	0.0141	0.0304	0.0171
	C	0.0171	0.2408	0.0166	0.0456
	G	0.0455	0.0166	0.2422	0.0172
	T	0.0170	0.0308	0.0140	0.1174
		id=71.8%

*excluding CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2538	0.0181	0.0347	0.0254
	C	0.0115	0.1192	0.0072	0.0293
	G	0.0285	0.0075	0.1188	0.0114
	T	0.0251	0.0374	0.0181	0.2539
		id=74.6%

*excluding CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2180	0.0202	0.0413	0.0230
	C	0.0111	0.1452	0.0093	0.0302
	G	0.0307	0.0092	0.1458	0.0113
	T	0.0228	0.0410	0.0202	0.2208
		id=73.0%

*excluding CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1303	0.0159	0.0339	0.0178
	C	0.0158	0.2270	0.0158	0.0422
	G	0.0423	0.0158	0.2294	0.0158
	T	0.0177	0.0340	0.0160	0.1302
		id=71.7%