Frequencies of observed changes for context-unconserved 4D sites

Frequencies of observed changes of bases between human and mouse for 4D sites where at least one of the aligned codons is a 4D codon and the first two bases are not conserved. This data is used to estimate the number of substitutions per site from the common ancestor. It is computed from these raw counts. Table rows are human bases pair with the mouse bases in the columns. See the methods page for a description of the categories.

*including CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1214	0.0213	0.0508	0.0163
	C	0.0195	0.1898	0.0252	0.0546
	G	0.0551	0.0248	0.1911	0.0201
	T	0.0160	0.0506	0.0215	0.1219
		id=62.4%

*including CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1965	0.0276	0.0625	0.0209
	C	0.0123	0.1271	0.0138	0.0378
	G	0.0376	0.0141	0.1285	0.0130
	T	0.0222	0.0637	0.0274	0.1949
		id=64.7%

*including CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1555	0.0257	0.0612	0.0188
	C	0.0152	0.1582	0.0196	0.0443
	G	0.0447	0.0195	0.1618	0.0157
	T	0.0176	0.0596	0.0264	0.1564
		id=63.2%

*including CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.0914	0.0182	0.0441	0.0143
	C	0.0227	0.2162	0.0299	0.0624
	G	0.0630	0.0293	0.2165	0.0233
	T	0.0141	0.0442	0.0182	0.0922
		id=61.6%

*including CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2110	0.0238	0.0480	0.0237
	C	0.0134	0.1246	0.0129	0.0423
	G	0.0438	0.0125	0.1223	0.0150
	T	0.0238	0.0515	0.0224	0.2090
		id=66.7%

*including CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1743	0.0245	0.0592	0.0207
	C	0.0154	0.1442	0.0166	0.0443
	G	0.0438	0.0171	0.1453	0.0158
	T	0.0202	0.0572	0.0249	0.1766
		id=64.0%

*including CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1020	0.0204	0.0488	0.0147
	C	0.0209	0.2059	0.0282	0.0580
	G	0.0587	0.0277	0.2072	0.0215
	T	0.0145	0.0488	0.0205	0.1022
		id=61.7%

*excluding CpGs, any GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1404	0.0194	0.0478	0.0188
	C	0.0173	0.1865	0.0182	0.0505
	G	0.0512	0.0179	0.1874	0.0180
	T	0.0185	0.0475	0.0196	0.1410
		id=65.5%

*excluding CpGs, low hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2147	0.0247	0.0565	0.0229
	C	0.0113	0.1221	0.0106	0.0359
	G	0.0358	0.0106	0.1243	0.0120
	T	0.0243	0.0575	0.0239	0.2130
		id=67.4%

*excluding CpGs, medium hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1756	0.0227	0.0563	0.0212
	C	0.0139	0.1522	0.0144	0.0421
	G	0.0422	0.0139	0.1563	0.0145
	T	0.0198	0.0543	0.0240	0.1766
		id=66.1%

*excluding CpGs, high hum GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1081	0.0168	0.0421	0.0169
	C	0.0201	0.2162	0.0216	0.0574
	G	0.0585	0.0213	0.2153	0.0208
	T	0.0167	0.0423	0.0168	0.1091
		id=64.9%

*excluding CpGs, low mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.2254	0.0218	0.0452	0.0254
	C	0.0124	0.1188	0.0106	0.0399
	G	0.0411	0.0100	0.1194	0.0138
	T	0.0254	0.0479	0.0197	0.2233
		id=68.7%

*excluding CpGs, medium mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1937	0.0221	0.0539	0.0229
	C	0.0142	0.1380	0.0126	0.0414
	G	0.0410	0.0126	0.1401	0.0143
	T	0.0222	0.0522	0.0226	0.1964
		id=66.8%

*excluding CpGs, high mus GC*
		Mouse
		A	C	G	T
H u m a n	A	0.1200	0.0185	0.0462	0.0173
	C	0.0185	0.2045	0.0202	0.0537
	G	0.0547	0.0199	0.2050	0.0193
	T	0.0171	0.0462	0.0188	0.1202
		id=65.0%