REV substitutions per site for all 4D sites

REV model estimates for 4D sites where at least one of the aligned codons is a 4D codon and the first two bases are not required to be conserved. These are estimates of the number of substitutions per site of various kinds in the evolution of the human and mouse genomes from their common ancestor. This is derived from the frequencies of bases paired in the alignment. Table rows are the original ancestrally base that is replaced and the columns are the arising base. See the methods page for a description of the categories.

*including CpGs, any GC*
		Arising
		A	C	G	T
O r i g	A		0.0234	0.0696	0.0210
	C	0.0234		0.0253	0.0694
	G	0.0696	0.0253		0.0236
	T	0.0210	0.0694	0.0236
		t=0.465

*including CpGs, low hum GC*
		Arising
		A	C	G	T
O r i g	A		0.0245	0.0636	0.0237
	C	0.0245		0.0144	0.0637
	G	0.0636	0.0144		0.0244
	T	0.0237	0.0637	0.0244
		t=0.429

*including CpGs, medium hum GC*
		Arising
		A	C	G	T
O r i g	A		0.0237	0.0669	0.0216
	C	0.0237		0.0203	0.0657
	G	0.0669	0.0203		0.0243
	T	0.0216	0.0657	0.0243
		t=0.445

*including CpGs, high hum GC*
		Arising
		A	C	G	T
O r i g	A		0.0237	0.0745	0.0205
	C	0.0237		0.0285	0.0747
	G	0.0745	0.0285		0.0238
	T	0.0205	0.0747	0.0238
		t=0.492

*including CpGs, low mus GC*
		Arising
		A	C	G	T
O r i g	A		0.0210	0.0544	0.0255
	C	0.0210		0.0130	0.0567
	G	0.0544	0.0130		0.0218
	T	0.0255	0.0567	0.0218
		t=0.385

*including CpGs, medium mus GC*
		Arising
		A	C	G	T
O r i g	A		0.0230	0.0641	0.0230
	C	0.0230		0.0167	0.0632
	G	0.0641	0.0167		0.0234
	T	0.0230	0.0632	0.0234
		t=0.427

*including CpGs, high mus GC*
		Arising
		A	C	G	T
O r i g	A		0.0240	0.0735	0.0204
	C	0.0240		0.0275	0.0734
	G	0.0735	0.0275		0.0242
	T	0.0204	0.0734	0.0242
		t=0.486

*excluding CpGs, any GC*
		Arising
		A	C	G	T
O r i g	A		0.0179	0.0514	0.0249
	C	0.0179		0.0146	0.0515
	G	0.0514	0.0146		0.0180
	T	0.0249	0.0515	0.0180
		t=0.357

*excluding CpGs, low hum GC*
		Arising
		A	C	G	T
O r i g	A		0.0194	0.0482	0.0276
	C	0.0194		0.0089	0.0488
	G	0.0482	0.0089		0.0190
	T	0.0276	0.0488	0.0190
		t=0.344

*excluding CpGs, medium hum GC*
		Arising
		A	C	G	T
O r i g	A		0.0184	0.0508	0.0255
	C	0.0184		0.0117	0.0495
	G	0.0508	0.0117		0.0192
	T	0.0255	0.0495	0.0192
		t=0.350

*excluding CpGs, high hum GC*
		Arising
		A	C	G	T
O r i g	A		0.0177	0.0539	0.0245
	C	0.0177		0.0167	0.0544
	G	0.0539	0.0167		0.0177
	T	0.0245	0.0544	0.0177
		t=0.369

*excluding CpGs, low mus GC*
		Arising
		A	C	G	T
O r i g	A		0.0173	0.0424	0.0285
	C	0.0173		0.0084	0.0452
	G	0.0424	0.0084		0.0173
	T	0.0285	0.0452	0.0173
		t=0.318

*excluding CpGs, medium mus GC*
		Arising
		A	C	G	T
O r i g	A		0.0183	0.0491	0.0267
	C	0.0183		0.0100	0.0484
	G	0.0491	0.0100		0.0184
	T	0.0267	0.0484	0.0184
		t=0.342

*excluding CpGs, high mus GC*
		Arising
		A	C	G	T
O r i g	A		0.0181	0.0535	0.0244
	C	0.0181		0.0160	0.0536
	G	0.0535	0.0160		0.0182
	T	0.0244	0.0536	0.0182
		t=0.368