The table lists the names for unannotated genes that were classified as members of a particular functional class by at least three of the four SVM methods.
| Gene | Locus | Comments |
| TCA | - | - |
| YHR188C | - | conserved in worm, S. pombe, human |
| YKL039W | PTM1 | major transport facilitator family. Likely to be an integral membrane protein. Structurally similar YHL017w is not co-regulated. |
| Respiration | - | - |
| YKR016W | - | not highly conserved, possible homolog in S. pombe |
| YKR046C | - | no convincing homologs |
| YPR020W | ATP20 | subsequently annotated: subunit of mitochondrial ATP synthase complex |
| YLR248W | CLK1/RCK2 | cytoplasmic protein kinase of unknown function |
| Ribosomes | - | - |
| YKL056C | - | homolog of translationally controlled tumor protein, abundant, conserved and ubiquitous protein of unknown function |
| YNL119W | - | possible remote homologs in several divergent species |
| YNL255C | GIS2 | cellular nucleic acid binding protein homolog, seven CCHC (retroviral) type zinc fingers |
| YNL053W | MSG5 | protein-tyrosine phosphatase, overexpression bypasses growth arrest by mating factor |
| YNL217W | - | similar to bis (5' nucleotidyl)-tetraphosphatases |
| Proteasomes | - | - |
| YDR330W | - | ubiquitin regulatory domain protein, S. pombe homolog |
| YJL036W | - | member of sorting nexin family |
| YDL053C | - | no convincing homologs |
| YLR387C | - | three C2H2 zinc fingers, structurally similar YBR267W is not coregulated |