Script for hmm400m

// Build a 400-state hmm, tune, merge and add useful
// Models tried with start=stop=loop

SplitSeq .5 0		50% for cross training

BuildHMM 400 1 1 999
Tune 5 .001
RemoveUseless 20 .99
Flatten 1 .1
Tune 1 .001
MergeStates 1 1.2

Tune 5 .001
RemoveUseless 20 .99
Flatten 1 .1
Tune 1 .001
MergeStates 2 1.4

Tune 5 .001
RemoveUseless 20 .99
Flatten 1 .1
Tune 1 .001
MergeStates 4 1.6

Tune 5 .001
RemoveUseless 20 1.99
Flatten 1 .1
AddUseful 10 15

Tune 5 .001
RemoveUseless 20 .99
Flatten 1 .1
Tune 1 .001
MergeStates 2 1.4

Tune 5 .001
RemoveUseless 20 .99
Flatten 1 .1
Tune 1 .001
MergeStates 4 1.6

Tune 5 .001
RemoveUseless 20 1.99
Flatten 1 .1

RestoreBest
SplitSeq 0 0	// tune on whole set
Tune 5 .001
RemoveUseless 20 .99
Flatten 1 .1

ReorderStates
Print