Best Alignments for YBL008W

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1nr0A/YBL008W-1nr0A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1nr0A/YBL008W-1nr0A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.2563e-431.7402e-70 b.69.4.1
1gotB/YBL008W-1gotB-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1gotB/YBL008W-1gotB-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.6637e-389.2231e-62 1tbgA b.69.4.1
1pguA/YBL008W-1pguA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1pguA/YBL008W-1pguA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.2914e-373.8982e-60 b.69.4.1
1erjA/YBL008W-1erjA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1erjA/YBL008W-1erjA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.2996e-375.1098e-58 1erjA b.69.4.1
1gxrA/YBL008W-1gxrA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1gxrA/YBL008W-1gxrA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.4066e-303.9151e-48 b.69.4.1
1k8kC/YBL008W-1k8kC-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1k8kC/YBL008W-1k8kC-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.4135e-291.6324e-44 b.69.4.1
1r5mA/YBL008W-1r5mA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1r5mA/YBL008W-1r5mA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 7.1810e-283.0517e-44
1vyhC/YBL008W-1vyhC-local-adpstyle1.a2m 1vyhC/YBL008W-1vyhC-local-adpstyle1.al 8.8087e-232.9079e-36
1sq9A/YBL008W-1sq9A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1sq9A/YBL008W-1sq9A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.6463e-215.2907e-33
1yfqA/YBL008W-1yfqA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1yfqA/YBL008W-1yfqA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.4831e-192.9630e-30
1p22A/YBL008W-1p22A-local-adpstyle1.a2m 1p22A/YBL008W-1p22A-local-adpstyle1.al 7.5556e-192.5077e-29 b.69.4.1
a.158.1.1
1u4cA/YBL008W-1u4cA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1u4cA/YBL008W-1u4cA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.2729e-196.1454e-29
1l0qA/YBL008W-1l0qA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1l0qA/YBL008W-1l0qA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.7578e-171.3156e-29 b.69.2.3
b.1.3.1
1trjA/YBL008W-1trjA-global-adpstyle5.a2m 1trjA/YBL008W-1trjA-global-adpstyle5.al 3.1487e-177.7257e-28
1nexB/YBL008W-1nexB-local-adpstyle5.a2m 1nexB/YBL008W-1nexB-local-adpstyle5.al 4.1553e-172.3888e-26 b.69.4.1
a.158.1.1
1ri6A/YBL008W-1ri6A-local-str2-1.5-adpstyle5.a2m 1ri6A/YBL008W-1ri6A-local-str2-1.5-adpstyle5.al 9.0504e-157.9411e-28 b.69.11.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001