January 3, 2003:
Due to a change to the systematic sequence of chromosome 2, YJBR098W and YBR100W have been merged to one single ORF. MMS4 is the standard name for the new, elongated ORF after merging; YBR100W and SLX2 are its aliases. We thank Jim Brown (james.brown@sstanford.edu) for reporting this sequence error on Chr II to SGD. More info
Reference:
Anand Sethuraman 2003-01-03 YBRCtau1 Deleted|LTR 2 150764 150404 C S0006814 deleted due to sequence correction (Date unknown) 2000-07-12 YCL003W Merged|ORF 3 W S0000509 YCL004W S0000510 YCL004w + YCL003w = YCL004w from mips 2001-07-23 YCL006C ORF|Deleted 3 107574 107245 C S0000512 MIPS: ORF destroyed with chrIII seq. update (09/14/2000) 2000-08-16 YCL012W Merged|ORF 3 100113 100808 W S0000518 YCL014W S0000520 YCL012W + YCL014W = new YCL014W from mips 2001-07-23 YCL013W ORF|Deleted 3 99600 99998 W S0000519 Deleted due to sequence correction (Date unknown) 2001-07-16 YCL021W Deleted|ORF 3 84076 84429 W S0000526 Deleted due to sequence correction (Date unknown) 2000-07-12 YCL026C Deleted|ORF 3 75045 74686 C S0000531 Deleted due to sequence correction (Date unknown) 2000-07-12 YCL053C Deleted|ORF 3 33897 33448 C S0000558 Deleted due to sequence correction (Date unknown) 2000-07-12 YCL060C Merged|ORF 3 C S0000565 YCL061C S0000566 YCL061c + YCL060c = YCL061c from mips 2001-07-23 YCL062W Deleted|ORF 3 17955 18542 W S0000567 Deleted due to sequence correction (Date unknown) 2000-07-12 YCLX01W Deleted|ORF 3 23511 23909 W L0003336 Deleted due to sequence correction (5/1998) 2000-07-12 YCLX03C Deleted|ORF 3 43476 43093 C S0000584 Deleted due to sequence correction (5/1998) 2000-07-12 YCLX04W Deleted|ORF 3 47401 47847 W S0000585 Deleted due to sequence correction (5/1998) 2000-07-12 YCLX05C Deleted|ORF 3 62381 62064 C S0000586 Deleted due to sequence correction (5/1998) 2000-07-12 YCLX06C Deleted|ORF 3 71088 70756 C S0000587 Deleted due to sequence correction (5/1998) 2000-07-12 YCLX07W Deleted|ORF 3 71943 72281 W S0000588 Deleted due to sequence correction (5/1998) 2000-07-12 YCLX08C Merged|ORF 3 75247 74669 C L0004082 YCL026C-A S0000589 Name changed due to sequence correction 2001-07-23 YCLX09W Deleted|ORF 3 76960 77352 W S0000590 Deleted due to sequence correction (5/1998) 2000-07-12 YCLX10C Deleted|ORF 3 91908 91597 C S0000591 Deleted due to sequence correction (5/1998) 2000-07-12 YCLX11W Deleted|ORF 3 104246 104704 W S0000592 Deleted due to sequence correction (5/1998) 2000-07-12 YCLX12W Deleted|ORF 3 107655 107993 W S0000593 Deleted due to sequence correction (5/1998) 2000-07-12 YCR029C Deleted|ORF 3 172976 172554 C S0000624 Deleted due to sequence correction (Date unknown) 2000-07-12 YCR029C-A Merged|ORF 3 C S0000625 YCR029c-a + YCR030c = YCR030c from mips 2001-07-23 YCR055C Merged|ORF 3 C S0000651 YCR057C S0000653 YCR055c + YCR057c + YCR058c = YCR057c from mips 2001-07-23 YCR056W Deleted|ORF 3 221153 221521 W S0000652 Deleted due to sequence correction (Date unknown) 2000-07-12 YCR058C Merged|ORF 3 C S0000654 YCR057C S0000653 YCR055c + YCR057c + YCR058c = YCR057c from mips 2001-07-23 YCR062W Merged|ORF 3 225820 226182 W S0000658 YCR061W S0000657 YCR061W + YCR062W = new YCR061W from mips 2001-07-23 YCR070W Merged|ORF 3 W S0000666 YCR069W S0000665 YCR070W incorporated into YCR069W 2001-07-23 YCR080W Merged|ORF 3 W S0000676 YCR081W S0000677 YCR080w + YCR081w = YCR081w from mips 2001-07-23 YCR097WA Merged|ORF 3 292559 293005 W S0000693 YCR097W-A S0007632 Name changed due to nomenclature 2001-07-23 YCR097WB Merged|ORF 3 292557 293043 W S0007657 YCR097W S0000694 Name changed due to nomenclature 2001-07-23 YCR103C ORF|Deleted 3 306310 305975 C S0000700 MIPS: ORF destroyed with chrIII seq. update (nt exchange created a stop after aa 45) (09/14/2000) 2000-08-16 YCRX03C Deleted|ORF 3 181795 181487 C S0000708 Deleted due to sequence correction (5/1998) 2000-07-12 YCRX05W Deleted|ORF 3 203027 203506 W S0000710 Deleted due to sequence correction (5/1998) 2000-07-12 YCRX07W Deleted|ORF 3 207585 208139 W S0000712 Deleted due to sequence correction (5/1998) 2000-07-12 YCRX10W Deleted|ORF 3 231914 232228 W S0000715 Deleted due to sequence correction (5/1998) 2000-07-12 YCRX12W Deleted|ORF 3 243040 243480 W S0000717 Deleted due to sequence correction (5/1998) 2000-07-12 YCRX13W Merged|ORF 3 245688 246635 W L0003116 YCR073W-A S0000718 name changed due to sequencing correction 2001-07-23 YCRX14W Deleted|ORF 3 249919 250236 W S0000719 Deleted due to sequence correction (5/1998) 2000-07-12 YCRX15W Deleted|ORF 3 251640 251948 W S0000720 Deleted due to sequence correction (5/1998) 2000-07-12 YCRX16C Deleted|ORF 3 263192 262731 C S0000721 Deleted due to sequence correction (5/1998) 2000-07-12 YCRX18C Deleted|ORF 3 270120 269713 C S0000723 Deleted due to sequence correction (5/1998) 2000-07-12 YCRX20C Deleted|ORF 3 282427 282116 C S0000725 Deleted due to sequence correction (5/1998) 2000-07-12 YCRX21C Deleted|ORF 3 313459 313073 C S0000726 Deleted due to sequence correction (5/1998) 2000-07-12 YERCsigma4 LTR|Deleted 5 498505 492434 C S0006907 Ty3 LTR The YERCsigma4 element was initially mistakenly annotated as a separate LTR, though its coordinates completely overlapped with the full length transposon YERCTy1-2. Thus, YERCsigma4 has been deleted from the database.
2002-11-19 KD 2002-11-19 YERWdelta18 LTR|Deleted 5 443366 449626 W S0006918 Ty1 LTR The YERWdelta18 element was initially mistakenly annotated as a separate LTR, though its coordinates completely overlapped with the full length transposon YERCTy1-1. Thus, YERWdelta18 has been deleted from the database.
2002-11-19 KD 2002-11-19 YFL-TyB Deleted 6 S0002963 deleted due to sequence correction (Date unknown) 2000-07-12 YFL011W-A Merged|ORF 6 114984 115268 W L0000156 YFL010W-A S0001955 Name changed due to nomenclature 2001-07-23 YFL018W-A Merged|ORF 6 103693 103926 W L0001955 YFL017W-A S0002965 typo - should have been YFL017W-A 2001-07-23 YFL035C Merged|ORF 6 C S0007658 YFL034C-B S0001859 from old sacch3D link 2001-07-23 YFL035C-A Merged|ORF 6 63993 63016 C S0002966 YFL034C-B S0001859 Name changed due to nomenclature 2001-07-23 YFL035C-B Merged|ORF 6 64932 64243 C S0002967 YFL034C-A S0006436 Name changed due to nomenclature 2001-07-23 YFL043C Merged|ORF 6 46157 45720 C S0001851 YFL042C S0001852 Due to a sequence change (deletion of G at 46151), YFL043C is now part of YFL042C. See Genbank entry YSCCHRVIN (2001-05-29). 2001-07-23 YHR039C-B Merged|ORF 8 187670 187164 C L0002954 YHR039C-A S0002100 Name changed due to nomenclature 2001-07-23 YHR079C-B Merged|ORF 8 262554 262402 C L0002893 YHR079C-A S0001957 Name changed due to nomenclature 2001-07-23 YJL018W ORF|Merged 10 404326 404641 W S0003555 YJL019W S0003556 Protein required for cell viability
January 2, 2003:
Due to a change to the systematic sequence of chromosome 10, YJL018W and YJL019W have been merged to one single ORF. MPS3 is the standard name for the new, elongated ORF after merging; YJL018W and NEP98 are its aliases. We thank Sue L. Jasperson and Mark Winey for reporting this sequence error on Chr X to SGD. More info
Reference:
Sue L. Jaspersen, Thomas H. Giddings, Jr., and Mark Winey Mps3p is a novel component of the yeast spindle pole body that interacts with the yeast centrin homologue Cdc31p J. Cell Biol. 2002 159: 945-956. Published Dec 16 2002
Anand Sethuraman 2003-01-02 YJL021C Merged|ORF 10 399730 398633 C S0003558 Seq change merges YJL021C and YJL020C. 2001-09-05 YJL206C-A Merged|ORF 10 50443 50139 C L0003097 YJL205C-A S0003742 Name changed due to nomenclature 2001-07-23 YJLWdelta2 LTR|Deleted 10 197194 204093 W S0007028 Ty1 LTR The YJLWdelta2 element was initially mistakenly annotated as a separate LTR, though its coordinates completely overlapped with the full length transposon YJLWTy4-1. Thus, YJLWdelta2 has been deleted from the database.
2002-11-19 KD 2002-11-19 YKL003W-A Deleted|ORF 11 437416 437535 W S0007614 Deleted ORF This ORF was added initially because of homology; see FEBS Letters [2000] 487:31-36. It was subsequently deleted because it is contained within the intron of DID4/YKL002w (Mark Hochstrasser, personal communication; Amerik et al., Mol Bio Cell 11: 3365, 2000). 2001-03-14 YKL097W-A Merged|ORF 11 258895 259173 W L0002857 YKL096W-A S0001956 Name changed due to nomenclature 2001-07-23 YKL200C Deleted|ORF 11 67109 65913 C S0001683 Deleted due to sequence correction (3/11/1999) 2000-07-12 YLR337W Merged|ORF 12 W L0002481 YLR337C S0004329 old change found in mips 2001-07-23 YLR391W-A Merged|ORF 12 903722 904438 W L0004428 YLR390W-A S0006429 Name changed due to nomenclature 2001-07-23 YML032C-A Deleted|ORF 13 214421 214086 C S0004495 deleted (8/23/1999) 2000-07-12 YOL053C-A Merged|ORF 15 231753 231568 C L0003478 YOL052C-A S0005413 Name changed due to nomenclature 2001-07-23 YOR240W Merged|ORF 15 785654 786742 W S0005766 YOR239W S0005765 +1 frameshift merges YOR239W and YOR240W into one ORF, YOR239W 2001-07-23