ISMB99 Tutorial Material

Making the most of your hidden Markov models
Handout Material

This tutorial is intended for people who know what an HMM is but want to know how to use them most effectively. It details the tricks used in the SAM-T98 method (in 1998 the best method for remote homology detection in proteins). One feature of this tutorial is the use of sequence logos on a running example to show how various operations change what is being searched for.


This document was generated using the LaTeX2HTML translator Version 97.1 (release) (July 13th, 1997) Copyright © 1993, 1994, 1995, 1996, 1997, Nikos Drakos, Computer Based Learning Unit, University of Leeds.
Last modified: Wednesday July 21 1999
Melissa Cline cline@cse.ucsc.edu